[Lilab] Group meeting OCT 9 materials

Shiwei Fu shiwei.fu at email.ucr.edu
Wed Oct 2 16:45:23 PDT 2024


Hi everyone,

I will be presenting at the *OCT 9* group meeting. I will introduce three
major types of methods that can detect domains based on spatial
transcriptomics data, especially when there are multiple samples.

These are the methods and their references:

1) Seurat basic workflow with Harmoney integration
2) BASS
3) IRIS

ref1 (Seurat) https://satijalab.org/seurat/
ref2 (Harmoney) https://www.nature.com/articles/s41592-019-0619-0
ref3 (BASS)
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02734-7
ref4 (IRIS) https://www.nature.com/articles/s41592-024-02284-9

-- 
Shiwei Fu
PhD Student
Department of Statistics
University of California, Riverside
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