[Lilab] Fwd: Bioinformatics Bootcamp: Getting started with analyzing Visium HD data

[Wei Vivian Li]

This is a great opportunity to learn more about spatial transcriptomics
data generated by 10x visium.




---------- Forwarded message ---------
From: Samantha Shelton, 10x Genomics <samantha.shelton at team.10xgenomics.com>
Date: Thu, Jan 9, 2025 at 10:01 AM
Subject: Bioinformatics Bootcamp: Getting started with analyzing Visium HD
data
To: <liw at ucla.edu>


In this webinar series, you'll embark on the Visium HD Spatial Gene
Expression data analysis journey with us.
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Webinar Learning Series

*Bioinformatics Bootcamp: Getting started with analyzing Visium HD data*

Register now
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In this Bioinformatics Bootcamp webinar series, you will embark on the
Visium HD Spatial Gene Expression data analysis journey with us. Running
your Visium HD assay is just the beginning. Next comes the exciting work of
data analysis, enabled by seamless exploration from whole tissues down to
single transcripts, leading to novel biological insights.

In our first session, we will begin with a guided tour of the 10x Cloud
Analysis platform, and start our journey by processing raw data from a
human colon cancer sample with Space Ranger using the 10x Cloud. Next, we
will assess data quality using the web summary and then dive into Loupe
Browser for manual image alignment, in-depth data exploration, and
cell-type mapping. We’ll then take these insights to community-developed
tools, allowing for further exploration of the tumor's spatial organization
and cellular interactions.


   -
*Session 1: Introduction to Visium HD data analysis with 10x Cloud *

*February 10, 10:00–11:00 AM PT *
   -
*Session 2: Hands-on Visium HD data visualization **February 12,
   10:00–11:00 AM PT*

Register now
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